CDS

Accession Number TCMCG057C47952
gbkey CDS
Protein Id XP_018456139.1
Location join(5998874..5999602,6000161..6000172)
Gene LOC108827261
GeneID 108827261
Organism Raphanus sativus

Protein

Length 246aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018600637.1
Definition PREDICTED: tRNA-splicing endonuclease subunit Sen2-2-like isoform X2 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description tRNA-intron endonuclease activity
KEGG_TC -
KEGG_Module M00359        [VIEW IN KEGG]
M00360        [VIEW IN KEGG]
KEGG_Reaction R01625        [VIEW IN KEGG]
R03663        [VIEW IN KEGG]
KEGG_rclass RC00002        [VIEW IN KEGG]
RC00055        [VIEW IN KEGG]
RC00523        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01007        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K01868        [VIEW IN KEGG]
ko:K06133        [VIEW IN KEGG]
ko:K15322        [VIEW IN KEGG]
ko:K15436        [VIEW IN KEGG]
EC 3.1.27.9        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
6.1.1.3        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00770        [VIEW IN KEGG]
ko00970        [VIEW IN KEGG]
map00770        [VIEW IN KEGG]
map00970        [VIEW IN KEGG]
GOs GO:0000213        [VIEW IN EMBL-EBI]
GO:0000214        [VIEW IN EMBL-EBI]
GO:0000379        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0004549        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0005740        [VIEW IN EMBL-EBI]
GO:0005741        [VIEW IN EMBL-EBI]
GO:0005813        [VIEW IN EMBL-EBI]
GO:0005815        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005856        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0015630        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016892        [VIEW IN EMBL-EBI]
GO:0016894        [VIEW IN EMBL-EBI]
GO:0019867        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031966        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031968        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044429        [VIEW IN EMBL-EBI]
GO:0044430        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0098588        [VIEW IN EMBL-EBI]
GO:0098805        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140101        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902555        [VIEW IN EMBL-EBI]
GO:1905348        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCACCCAGATGGAAATGGAAAGGTGCTGAAGCGAAGGCTCTTGCGGAACCCATTTCAAACTCAGTCTCTCAGCTCCAACTCTCTCTAGCCAAATCAGAGACATCAGGGTCCCTCTCGAGTTGCAACGTGCTTCTAGCGGTTGAGCCAGAGCAAGCTGAGCTACTAAACCGCTGTTGTTTTGGCACACTCGTCCTATCCCCTGAGAAAGTCAAGAAATGGATTCAGTTATCCTTTGAAGAAGCTTTGTACTTGCACTACAATCTCAAATGCATCAAAATCTATCTTCAAGGCCGTTGCTTGGAGAAGGAAGTCGACGCATGGATGTACATGAGATCAAAAAGACCAAACTTCCCGATATTTTTCAAAGCTTATTCACATTTACGGTCCAAGAACTGGGTCTTGAGGTCAGGGTTGCAGTACGGTGTGGATTTCGTGGCATACCGTCACCATCGATCTCTTGTCCACTCTGAATACTCTGTTTTAGTTCAGTCTGGTGACAGTAACCGGTTAAGAGTGTGGTCAGATGTCCATTGTGCTGTTCGGTTAAGCGGGAGCGTTGCGAAAACGTTATTGACTCTCCATGTTAGTGGTAAATCTTACAAAGAGGATTTTAATCTACCTTTGTGCTTGGATAACTACACAGTGGAAGAGCATACTATTTGTAGATGGAGCCCAGAACTCAGCCGCGAAGATGAAACCATTAATTCAAAACCAAATGCTACCACTGCTATACATTGA
Protein:  
MAPRWKWKGAEAKALAEPISNSVSQLQLSLAKSETSGSLSSCNVLLAVEPEQAELLNRCCFGTLVLSPEKVKKWIQLSFEEALYLHYNLKCIKIYLQGRCLEKEVDAWMYMRSKRPNFPIFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHRSLVHSEYSVLVQSGDSNRLRVWSDVHCAVRLSGSVAKTLLTLHVSGKSYKEDFNLPLCLDNYTVEEHTICRWSPELSREDETINSKPNATTAIH